Coverm

Description

coverm website

CoverM aims to be a configurable, easy to use and fast DNA read coverage and relative abundance calculator focused on metagenomics applications. CoverM calculates coverage of genomes/MAGs or individual contigs. Calculating coverage by read mapping, its input can either be BAM files sorted by reference, or raw reads and reference genomes in various formats.

Environment Modules

Run module spider coverm to find out what environment modules are available for this application.

Environment Variables

• HPC_COVERM_DIR - installation directory
• HPC_COVERM_BIN - executable directory

Categories

biology, genomics, ngs