Coot¶
Description¶
Coot is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data.
Coot displays maps and models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, skeletonization, non-crystallographic symmetry and more.
Environment Modules¶
Run module spider coot
to find out what environment modules are available for this application.
Environment Variables¶
- HPC_COOT_DIR - installation directory
- HPC_COOT_BIN - executable directory
Citation¶
If you publish research that uses coot you have to cite it as follows:
Emsley, P., Lohkamp, B., Scott, W. G., & Cowtan, K. (2010). Features and development of Coot. Acta Crystallographica Section D: Biological Crystallography, 66(4), 486–501. https://doi.org/10.1107/S0907444910007493
Categories¶
modeling