Conpair¶

Description¶

Conpair: concordance and contamination estimator for tumor–normal pairs Conpair is a fast and robust method dedicated for human tumor-normal studies to perform concordance verification (= samples coming from the same individual), as well as cross-individual contamination level estimation in whole-genome and whole-exome sequencing experiments. Importantly, our method of estimating contamination in the tumor samples is not affected by copy number changes and is able to detect contamination levels as low as 0.1%.

Environment Modules¶

Run module spider conpair to find out what environment modules are available for this application.

Environment Variables¶

HPC_CONPAIR_DIR - installation directory
HPC_CONPAIR_BIN - executable directory
HPC_CONPAIR_DOC - documentation directory
HPC_CONPAIR_DAT - data directory

Categories¶

biology, phylogenetics