CONCOCT

Description

concoct website

Clustering cONtigs with COverage and ComposiTion. CONCOCT is a program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads. Warning! This software is to be considered under development. Functionality and the user interface may still change significantly from one version to another. If you want to use this software, please stay up to date with the list of known issues: https://github.com/BinPro/CONCOCT/issues

Environment Modules

Run module spider concoct to find out what environment modules are available for this application.

Environment Variables

• HPC_CONCOCT_DIR - installation directory
• HPC_CONCOCT_BIN - executable directory

Categories

biology, genomics