compass¶

Description¶

Compass is an algorithm to characterize the metabolic state of cells based on single-cell RNA-Seq and flux balance analysis (FBA). Its development was motivated by the challenge in characterizing the metabolic states of single cells on scale with current metabolic assays. Compass is an in silico approach to infer metabolic status of cells based on transcriptome data, which is readily available even in single cell resolutions.

Environment Modules¶

Run module spider compass to find out what environment modules are available for this application.

Environment Variables¶

HPC_COMPASS_DIR - installation directory
HPC_COMPASS_BIN - executable directory

Categories¶

rna-seq, metabolomics