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Compacta

Description

compacta website

Compacta is a software designed to reduce the number of contigs given by the assembler to a smaller set of representative sequences, preserving the information about relative expression given by the reads. Compacta output can then be employed in downstream analyses for contig identification and differential gene expression.

Environment Modules

Run module spider compacta to find out what environment modules are available for this application.

Environment Variables

  • HPC_COMPACTA_DIR - installation directory
  • HPC_COMPACTA_BIN - executable directory

Citation

If you publish research that uses Compacta you have to cite it as follows:

bioCompU. (2019). bioCompU/Compacta: Compacta v1.02 (v1.02). Zenodo. https://doi.org/10.5281/zenodo.3469484

Categories

biology, genomics