Citation

If you publish research that uses comap you have to cite it as follows:

Cite the following article if you use the pairwise method

• Dutheil, J., Pupko, T., Jean-Marie, A., & Galtier, N. (2005). A model-based approach for detecting coevolving positions in a molecule. Molecular Biology and Evolution, 22(9), 1919–1928. https://doi.org/10.1093/molbev/msi185

Cite the following article if you use the clustering method

• Dutheil, J., & Galtier, N. (2007). Detecting groups of co-evolving positions in a molecule: A clustering approach. BMC Evolutionary Biology, 7, 242. https://doi.org/10.1186/1471-2148-7-242

Cite the following article if you use the candidate approach method

• Dutheil, J. Y., Jossinet, F., & Westhof, E. (2010). Base pairing constraints drive structural epistasis in ribosomal RNA sequences. Molecular Biology and Evolution, 27(8), 1868–1876. https://doi.org/10.1093/molbev/msq079

MICA and the new p-value computation algorithm are described in:

• Dutheil, J. Y. (2012). Detecting coevolving positions in a molecule: Why and how to account for phylogeny. Briefings in Bioinformatics, 13(2), 228–243. https://doi.org/10.1093/bib/bbr048