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CodonPhyML

Description

codonphyml website

codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE).

Environment Modules

Run module spider codonphyml to find out what environment modules are available for this application.

Environment Variables

  • HPC_CODONPHYML_DIR - installation directory
  • HPC_CODONPHYML_BIN - executable directory

Citation

If you publish research that uses codonphyml you have to cite it as follows:

Henry, L., & Hudson, R. R. (2013). Experimental demonstration of a population-genetic process rarely considered—genome-wide mutational drift. Molecular Biology and Evolution, 30(6), 1270–1278. https://doi.org/10.1093/molbev/mst021 

Categories

phylogenetics