CNVnator¶
Description¶
A tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
Environment Modules¶
Run module spider cnvnator to find out what environment modules are available for this application.
Environment Variables¶
- HPC_CNVNATOR_DIR - installation directory
- HPC_CNVNATOR_BIN - executable directory
Citation¶
If you publish research that uses cnvnator you have to cite it as follows:
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., Pimentel, H., Salzberg, S. L., Rinn, J. L., & Pachter, L. (2011). Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Genome Research, 21(6), 974–984. https://doi.org/10.1101/gr.114876.110
Categories¶
biology, genomics