Skip to content

CLUMPP

Description

clumpp website

CLUMPP is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. CLUMPP permutes the clusters output by independent runs of clustering programs such as structure, so that they match up as closely as possible. The user has the option of choosing one of three algorithms for aligning replicates, with a tradeoff of speed and similarity to the optimal alignment.

Environment Modules

Run module spider clumpp to find out what environment modules are available for this application.

Environment Variables

  • HPC_CLUMPP_DIR - installation directory
  • HPC_CLUMPP_BIN - executable directory
  • HPC_CLUMPP_DOC - documentation directory
  • HPC_CLUMPP_EXE - examples directory
  • HPC_CLUMPP_CONF - paramfile directory

Categories

biology