Clover¶

Description¶

Clover is a clustering-oriented de novo assembler for Illumina sequences, which bases on the de Bruijn graph method and utilizes a novel k-mer clustering approach from the overlap-based concept to improve the robustness with respect to sequencing error especially using large k-mers. Clover achieves a superior assembly quality in terms of corrected N50 and E-size.

Environment Modules¶

Run module spider clover to find out what environment modules are available for this application.

Environment Variables¶

HPC_CLOVER_DIR - installation directory
HPC_CLOVER_BIN - executable directory

Categories¶

biology, genomics, assembly