clipkit¶

Description¶

ClipKIT is a fast and flexible alignment trimming tool that keeps phylogenetically informative sites and removes those that display characteristics poor phylogenetic signal.

Environment Modules¶

Run module spider clipkit to find out what environment modules are available for this application.

Environment Variables¶

HPC_CLIPKIT_DIR - installation directory
HPC_CLIPKIT_BIN - executable directory

Citation¶

If you publish research that uses clipkit you have to cite it as follows:

Steenwyk, J. L., Buida, T. J., Li, Y., Shen, X. X., & Rokas, A. (2020). ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference. PLOS Biology, 18(12), e3001007. https://doi.org/10.1371/journal.pbio.3001007

Categories¶

genomics, biology