Usage

When loading the module CLEAN, the environment is loaded with necessary dependencies to run CLEAN_infer_fasta.py. Users should still clone the CLEAN repo locally from:

https://github.com/tttianhao/CLEAN

to their work directory. Once cloned, the user should also make a new directory inside the CLEAN repo using the following command.

git clone https://github.com/facebookresearch/esm.git; mkdir data/esm_data

Next, run for the first time

python CLEAN_infer_fasta.py --fasta_data price

To work with FASTA files, download the provided files from the repo and move them to data/pretrained.