ClairS¶

Description¶

ClairS is a somatic variant caller designed for paired samples and primarily ONT long-read. It uses Clair3 to eliminate germline variants. It ensembles the pileup and full-alignment models in Clair3, trusts them equally, and decides on the result using a set of rules and post-processing filters. This module sets the following environment variables:

Environment Modules¶

Run module spider clairs to find out what environment modules are available for this application.

Environment Variables¶

HPC_CLAIRS_IMAGE - path to container image

Categories¶

biology, genomics, sequencing, machine_learning