clair3

Description

clair3 website

Clair3 is a germline small variant caller for long-reads. Clair3 makes the best of two major method categories: pileup calling handles most variant candidates with speed, and full-alignment tackles complicated candidates to maximize precision and recall. Clair3 runs fast and has superior performance, especially at lower coverage. Clair3 is simple and modular for easy deployment and integration. This module sets the following environment variables:

Environment Modules

Run module spider clair3 to find out what environment modules are available for this application.

Environment Variables

• HPC_CLAIR3_IMAGE - path to container image

Categories

biology, genomics, sequencing, machine_learning