ciriquant¶
Description¶
CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
Environment Modules¶
Run module spider ciriquant
to find out what environment modules are available for this application.
Environment Variables¶
- HPC_CIRIQUANT_DIR - installation directory
- HPC_CIRIQUANT_BIN - executable directory
Additional Usage Information¶
After loading the module, run the following command to see the CIRIquant help message.
CIRIquant -help
Citation¶
Zhang, J., Chen, S., Yang, J., Zhang, X., Wang, L., Yang, L., & Chen, L. (2020). Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nature Communications, 11, 90. https://doi.org/10.1038/s41467-019-13840-9
Categories¶
phylogenetics