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ciriquant

Description

ciriquant website

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data

Environment Modules

Run module spider ciriquant to find out what environment modules are available for this application.

Environment Variables

  • HPC_CIRIQUANT_DIR - installation directory
  • HPC_CIRIQUANT_BIN - executable directory

Additional Usage Information

After loading the module, run the following command to see the CIRIquant help message.

CIRIquant -help

Citation

Zhang, J., Chen, S., Yang, J., Zhang, X., Wang, L., Yang, L., & Chen, L. (2020). Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nature Communications, 11, 90. https://doi.org/10.1038/s41467-019-13840-9

Categories

phylogenetics