circompara2¶

Description¶

CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs from RNA-seq data that combines multiple circRNA-detection methods.

Environment Modules¶

Run module spider circompara2 to find out what environment modules are available for this application.

Environment Variables¶

HPC_CIRCOMPARA2_DIR - installation directory
HPC_CIRCOMPARA2_BIN - executable directory

Citation¶

If you publish research that uses circompara2 you have to cite it as follows:

Enrico Gaffo, Alessia Buratin, Anna Dal Molin, Stefania Bortoluzzi, Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2, Briefings in Bioinformatics, 2021;, bbab418, https://doi.org/10.1093/bib/bbab418

Categories¶

phylogenetics