circexplorer3¶
Description¶
A computational pipeline for Circular and Linear RNA Expression Analysis from Ribosomal-RNA depleted (Ribo–) RNA-seq (CLEAR/CIRCexplorer3).
Environment Modules¶
Run module spider circexplorer3 to find out what environment modules are available for this application.
Environment Variables¶
- HPC_CIRCEXPLORER3_DIR - installation directory
- HPC_CIRCEXPLORER3_BIN - executable directory
Citation¶
If you publish research that uses circexplorer3 you have to cite it as follows:
Ma XK*, Wang MR, Liu CX, Dong R, Carmichael GG, Chen LL and Yang L#. A CLEAR pipeline for direct comparison of circular and linear RNA expression. 2019, bioRxiv doi: 10.1101/668657
Categories¶
RNA-Seq