checkv

Description

checkv website

CheckV is a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identification of host contamination for integrated proviruses, estimating completeness for genome fragments, and identification of closed genomes. * CHECKVDB - reference data directory

Environment Modules

Run module spider checkv to find out what environment modules are available for this application.

Environment Variables

• HPC_CHECKV_DIR - installation directory
• HPC_CHECKV_BIN - executable directory

Categories

biology, genomics