cgmlstfinder¶

Description¶

Core genome Multi-Locus Sequence Typing cgMLSTFinder runs KMA [1] against a chosen core genome MLST (cgMLST) database and outputs the detected alleles in a matrix file. Modules system sets up the following environment variables for this module:

Environment Modules¶

Run module spider cgmlstfinder to find out what environment modules are available for this application.

Environment Variables¶

HPC_CGMLSTFINDER_DIR - installation directory
HPC_CGMLSTFINDER_BIN - executable directory

Categories¶

genetics