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CGATools

Description

cgatools website

The Complete Genomics Analysis Tools (cgatools) is an open source project to provide tools for downstream analysis of Complete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include genome comparison, format conversion, and reference tools. Documentation for the latest release of cgatools, including an installation guide, is available at http://cgatools.sourceforge.net/docs/1.5.0.

Environment Modules

Run module spider cgatools to find out what environment modules are available for this application.

Environment Variables

  • HPC_CGATOOLS_DIR - installation directory
  • HPC_CGATOOLS_BIN - executable directory
  • HPC_CGATOOLS_REF - reference directory

Citation

If you publish research that uses cgatools you have to cite it as follows: R. Drmanac, et. al. Science 327(5961), 78. [DOI: 10.1126/science.1181498]

Categories

biology, ngs