CENdetectHOR

Description

cendetecthor website

The CENdetectHOR pipeline is a Snakemake pipeline was created to deeply analyze centromeric region, by taking as input single-chromosome (or centromere, if you already know its location) fasta sequences and optionally the consensus sequence of the centromeric satellite for the analysed organism. Without needing any other information, CENdetectHOR is able to:

• precisely locate the higly repetitive region of the input sequence; * infer the size of the repetitive unit; * extract all the monomeric sequences of the higly repetitive region; * cluster monomers to phylogenetically identify Higher-Order Repeats (HORs) and monomer families.

Environment Modules

Run module spider cendetecthor to find out what environment modules are available for this application.

Environment Variables

• HPC_CENDETECTHOR_DIR - installation directory
• HPC_CENDETECTHOR_BIN - executable directory
• CENDETECTHOR_PIPELINE - pipeline directory

Categories

biology, genomics