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CellRanger-DNA

Description

cellranger-dna website

Cell Ranger DNA is a set of analysis pipelines that process Chromium single cell DNA sequencing output to align reads, identify copy number variation (CNV), and compare heterogeneity among cells. Available references: GRCh37, GRCh38

Environment Modules

Run module spider cellranger-dna to find out what environment modules are available for this application.

Environment Variables

  • HPC_CELLRANGERDNA_DIR - installation directory
  • HPC_CELLRANGERDNA_BIN - executable directory
  • HPC_CELLRANGERDNA_REF - reference data directory

Categories

biology, ngs, rna-seq, genomics