CellRanger-ATAC

Description

cellranger-atac website

The Chromium Single Cell ATAC Software Suite is a set of software applications for analyzing and visualizing single cell chromatin accessibility data produced by the 10x Chromium Platform. The software suite includes Cell Ranger ATAC and Loupe Cell Browser: Available reference datasets: ercc92, GRCh38, hg19, hg19_and_mm10, mm10

Environment Modules

Run module spider cellranger-atac to find out what environment modules are available for this application.

Environment Variables

• HPC_CELLRANGERATAC_DIR - installation directory
• HPC_CELLRANGERATAC_BIN - executable directory

Categories

biology, ngs, rna-seq