celescope_atac¶

Description¶

Celescope_ATAC is used to process single cell atac sequencing data generated with Singleron product. This pipeline takes paired-end FASTQ files as input and generate output files which can be used for downstream data analysis as well as a summary of QC criteria.

Environment Modules¶

Run module spider celescope_atac to find out what environment modules are available for this application.

Environment Variables¶

HPC_CELESCOPE_ATAC_DIR - installation directory
HPC_CELESCOPE_ATAC_BIN - executable directory
HPC_CELESCOPE_ATAC_REF - reference directory

Categories¶

biology, sequencing, genomics