CDBFasta

Description

cdbfasta website

Platform independent file-based hashing tools (cdbfasta and cdbyank) that can be used for creating indices for quick retrieval of any particular sequences from large multi-FASTA files. The last version has the option to compress data records in order to save space. The index files are now architecture independent, the same index file can be created and used on many different Unix platform (be it 32bit/64bit, big-endian or little-endian architectures) and even Windows.

Environment Modules

Run module spider cdbfasta to find out what environment modules are available for this application.

Environment Variables

• HPC_CDBFASTA_DIR - installation directory
• HPC_CDBFASTA_BIN - executable directory

Categories

phylogenetics