CCMetagen¶
Description¶
CCMetagen is a pipeline to classify organisms in metagenomes or metatranscriptomes accurately.
Environment Modules¶
Run module spider ccmetagen to find out what environment modules are available for this application.
Environment Variables¶
- HPC_CCMETAGEN_DIR - installation directory
- HPC_CCMETAGEN_BIN - executable directory
Citation¶
If you publish research that uses CCMetagen you have to cite it as follows:
Marcelino VR, Clausen PT, Buchman J, Wille M, Iredell JR, Meyer W, Lund O, Sorrell T, Holmes EC. 2019. CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data. Genome Biology. 2020 Dec. 21. https://doi.org/10.1186/s13059-020-02014-2
Clausen PT, Aarestrup FM, Lund O. 2018. Rapid and precise alignment of raw reads against redundant databases with KMA. BMC Bioinformatics. 2018 Dec. 19. https://doi.org/10.1186/s12859-018-2336-6
Categories¶
phylogenetics