CarveMe¶

Description¶

CarveMe is a Python-based tool for genome-scale metabolic model reconstruction from protein FASTA files, leveraging DIAMOND for rapid sequence alignment and IBM CPLEX or SCIP for optimization.

Environment Modules¶

Run module spider carveme to find out what environment modules are available for this application.

Environment Variables¶

HPC_CARVEME_DIR - installation directory
HPC_CARVEME_BIN - executable directory

Categories¶

metabolic-modeling