c-wap¶

Description¶

C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read (Illumina) whole genome sequencing data of DNA extracted from wastewater. It was developed for SARS-CoV2 and its variants. * KRAKEN2_DEFAULT_DB - reference database

Environment Modules¶

Run module spider c-wap to find out what environment modules are available for this application.

Environment Variables¶

HPC_CWAP_DIR - installation directory
HPC_CWAP_BIN - executable directory

Categories¶

sequencing, genomics, biology