braker¶
Description¶
Unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS
Environment Modules¶
Run module spider braker to find out what environment modules are available for this application.
Environment Variables¶
- HPC_BRAKER_DIR - installation directory
- HPC_BRAKER_BIN - executable directory
- HPC_BRAKER_IMAGE - apptainer image directory
Additional Usage Information¶
Prior to running braker, you will need to copy the AUGUSTUS_CONFIG_PATH to your working directory:
$ cd /path/to/blue/working/directory
$ module load braker
$ cp -r $AUGUSTUS_CONFIG_PATH .
After loading the module in your job script, you will need to export the path to the config directory:
$ export AUGUSTUS_CONFIG_PATH=/path/to/blue/working/directory/config
Citation¶
If you publish research that uses braker you have to cite it as follows:
https://github.com/Gaius-Augustus/BRAKER#citing-braker-and-software-called-by-braker
Categories¶
phylogenetics