Bowtie¶

Description¶

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). * BOWTIE_INDEXES - indexes directory

Environment Modules¶

Run module spider bowtie to find out what environment modules are available for this application.

Environment Variables¶

HPC_BOWTIE_DIR - installation directory
HPC_BOWTIE_BIN - executable directory
HPC_BOWTIE_DOC - documents directory
HPC_BOWTIE_EX - examples directory
HPC_BOWTIE_SCR - scripts directory

Categories¶

biology, ngs, sequencing