BloomTree¶

Description¶

The Sequence Bloom Tree (SBT) is a method that will allow you to index a set of short-read sequencing experiments and then query them quickly for a given sequence. The code base provided here is an implementation of SBT written in C++ and is open source.

Environment Modules¶

Run module spider bloomtree to find out what environment modules are available for this application.

Environment Variables¶

HPC_BLOOMTREE_DIR - installation directory
HPC_BLOOMTREE_BIN - executables directory

Citation¶

If you publish research that uses Bloomtree you have to cite it as follows:

Solomon, B., & Kingsford, C. (2016). Fast search of thousands of short-read sequencing experiments. Nature Biotechnology, 34(3), 300–302. https://doi.org/10.1038/nbt.3442

Categories¶

data_mining