Bismark¶
Description¶
This module lets you use the Bismark software
Environment Modules¶
Run module spider bismark to find out what environment modules are available for this application.
Environment Variables¶
- HPC_BISMARK_DIR - installation directory
- HPC_BISMARK_BIN - executable directory
Citation¶
If you publish research that uses bismark you have to cite it as follows:
Krueger F, Andrews SR. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi: 10.1093/bioinformatics/btr167. Epub 2011 Apr 14. PubMed PMID: 21493656; PubMed Central PMCID: PMC3102221.
Categories¶
biology, ngs