Bismark¶
Description¶
This module lets you use the Bismark software
Bismark is a bisulfite read mapper and methylation caller.
Environment Modules¶
Run module spider bismark to find out what environment modules are available for this application.
Environment Variables¶
- HPC_BISMARK_DIR - installation directory
- HPC_BISMARK_BIN - executable directory
Citation¶
If you publish research that uses bismark you have to cite it as follows:
Krueger, F., & Andrews, S. R. (2011). Bismark: A flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics, 27(11), 1571–1572. https://doi.org/10.1093/bioinformatics/btr167
Categories¶
biology, ngs