BinSanity¶

Description¶

Program implements Affinity Propagation to cluster contigs into putative genomes. BinSanity uses contig coverage as an input, while BinSanity-refine incorporates tetranucleotide frequencies, GC content, and an optional input of coverage. All relevant scripts to produce inputs for BinSanity are provided here.

Environment Modules¶

Run module spider binsanity to find out what environment modules are available for this application.

Environment Variables¶

HPC_BINSANITY_DIR - installation directory
HPC_BINSANITY_BIN - executable directory

Citation¶

If you publish research that uses binsanity you have to cite it as follows:

Graham, E., Heidelberg, J. & Tully, B. BinSanity: Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation. bioRxiv, doi:10.1101/069567 (2016).

Categories¶

biology, genomics