BEDOPS¶

Description¶

BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

Environment Modules¶

Run module spider bedops to find out what environment modules are available for this application.

Environment Variables¶

HPC_BEDOPS_DIR - installation directory
HPC_BEDOPS_BIN - executable directory
HPC_BEDOPS_DATA - data directory

Categories¶

biology, sequencing, ngs