BCLConvert

Description

bclconvert website

The Illumina BCL Convert v4.0 is a standalone local software app that converts the Binary Base Call (BCL) files produced by Illumina sequencing systems to FASTQ files. BCL Convert v4.0 also provides adapter handling (through masking and trimming), unique molecular identifier (UMI) trimming, and produces metric outputs.

Environment Modules

Run module spider bclconvert to find out what environment modules are available for this application.

Environment Variables

• HPC_BCLCONVERT_DIR - location of the installation directory
• HPC_BCLCONVERT_BIN - location of the executables directory

Categories

biology, ngs