bcftools¶

Description¶

BCFtools are meant as a faster replacement for most of the perl VCFtools commands. This package contains all the vcf* commands which previously lived in the htslib repository (such as vcfcheck, vcfmerge, vcfisec, etc.) and the samtools BCF calling from bcftools subdirectory of samtools.

Environment Modules¶

Run module spider bcftools to find out what environment modules are available for this application.

Environment Variables¶

HPC_BCFTOOLS_DIR - installation directory
HPC_BCFTOOLS_BIN - executable directory

Categories¶

biology, ngs