bamUtil¶
Description¶
This module lets you use the bamUtil software
Programs that perform operations on SAM/BAM files. All of these programs are built into a single executable, bam.
Tools to Rewrite SAM/BAM Files: convert, writeRegion, splitChromosome, splitBam, trimBam, rgMergeBam, polishBam, findCigars.
Tools to Modify & write SAM/BAM Files: clipOverlap, filter, revert, squeeze
Informational Tools: validate, diff, stats, gapInfo
Tools to Print Information In Readable Format dumpHeader, dumpRefInfo, dumpIndex, readReference
Additional Tools bam2FastQ
Dummy/Example Tools readReference
Environment Modules¶
Run module spider bamutil to find out what environment modules are available for this application.
Environment Variables¶
- HPC_BAMUTIL_DIR - installation directory
- HPC_BAMUTIL_BIN - executable directory
Categories¶
biology, genomics