Citation

If you publish research that uses BALi-Phy you have to cite it as follows:

• Redelings, B. D., & Suchard, M. A. (2005). Joint Bayesian estimation of alignment and phylogeny. Systematic Biology, 54(3), 401–418. https://doi.org/10.1080/10635150590947041

• Suchard, M. A., & Redelings, B. D. (2006). BAli-Phy: Simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics, 22(16), 2047–2048. https://doi.org/10.1093/bioinformatics/btl175

• Redelings, B. D., & Suchard, M. A. (2007). Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. BMC Evolutionary Biology, 7, 40. https://doi.org/10.1186/1471-2148-7-40

• Redelings, B. D. (2014). Erasing errors due to alignment ambiguity when estimating positive selection. Molecular Biology and Evolution, 31(8), 1979–1993. https://doi.org/10.1093/molbev/msu173