bakta¶
Description¶
Bakta is a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis.
Environment Modules¶
Run module spider bakta
to find out what environment modules are available for this application.
Environment Variables¶
- HPC_BAKTA_DIR - installation directory
- HPC_BAKTA_BIN - executable directory
- BAKTA_DB - reference database directory
Citation¶
If you publish research that uses Bakta you have to cite it as follows:
Schwengers, O., Jelonek, L., Dieckmann, M. A., Beyvers, S., Blom, J., & Goesmann, A. (2021). Bakta: Rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. Microbial Genomics, 7(11), 000685. https://doi.org/10.1099/mgen.0.000685
Categories¶
genomics, biology