Usage

To allocate a set amount of memory for ASTRAL (java application), for example 2g run the following command in the terminal or the job script:

export _JAVA_OPTIONS="-Xmx2g"

We provide an 'astral' wrapper script, so java -jar ... doesn't have to be called manually. An example command to run ASTRAL:

astral -i simulated_primates_5X.10.gene.tre -o simulated_primates_5X.10.gene_out.tre