AStalavista¶

Description¶

AStalavista is a computer program to extract alternative splicing (AS) events from a given genomic annotation of exon-intron gene coordinates. By comparing all given transcripts, AStalavista detects the variations in their splicing structure and identify all AS events (like exon skipping, alternate donor, etc) by assigning to each of them an AS code.

Environment Modules¶

Run module spider astalavista to find out what environment modules are available for this application.

Environment Variables¶

HPC_ASTALAVISTA_DIR - installation directory
HPC_ASTALAVISTA_BIN - executable directory
HPC_ASTALAVISTA_DOC - documentation directory

Categories¶

biology, genomics