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ASDEC

Description

asdec website

ASDEC (Accurate Sweep Detection Enabled by a CNN) is a stand-alone software implementation of a Convolutional Neural Network (CNN) for whole-genome sweep detection. The current ASDEC release can process SNP data in Hudson's ms, VCF (Variant Call Format) file formats or FASTA using RAiSD for parsing to vcf first. The given basic run example is in Hudson's ms format. For the VCF format, refer to the respective Wikipedia entry (https://en.wikipedia.org/wiki/Variant_Call_Format).

Environment Modules

Run module spider asdec to find out what environment modules are available for this application.

Environment Variables

  • HPC_ASDEC_DIR - installation directory
  • HPC_ASDEC_BIN - executable directory

Categories

bioinformatics