asaq¶
Description¶
The ASAQ method has been implemented in C++ to be run in a UNIX terminal. Given an alignment of four sequences, ASAQ computes three weights, one for each possible tree topology.
Environment Modules¶
Run module spider asaq
to find out what environment modules are available for this application.
Environment Variables¶
- HPC_ASAQ_DIR - installation directory
- HPC_ASAQ_BIN - executable directory
- HPC_ASAQ_LIB - Library directory
Citation¶
If you publish research that uses Asaq you have to cite it as follows:
Sanderson, C., & Curtin, R. (2016). Armadillo: A template-based C++ library for linear algebra. Journal of Open Source Software, 1(2), 26. https://doi.org/10.21105/joss.00026
Sanderson, C., & Curtin, R. (2018). A user-friendly hybrid sparse matrix class in C++. In A. Iliopoulos et al. (Eds.), Lecture Notes in Computer Science (Vol. 10931, pp. 422–430). Springer. https://doi.org/10.1007/978-3-319-96418-8_41
Categories¶
alignment, sequencing, phylogenetics