Skip to content

asaq

Description

asaq website

The ASAQ method has been implemented in C++ to be run in a UNIX terminal. Given an alignment of four sequences, ASAQ computes three weights, one for each possible tree topology.

Environment Modules

Run module spider asaq to find out what environment modules are available for this application.

Environment Variables

  • HPC_ASAQ_DIR - installation directory
  • HPC_ASAQ_BIN - executable directory
  • HPC_ASAQ_LIB - Library directory

Citation

If you publish research that uses Asaq you have to cite it as follows:

Please cite the following papers if you use Armadillo in your research and/or software. Citations are useful for the continued development and maintenance of the library.

Conrad Sanderson and Ryan Curtin. Armadillo: a template-based C++ library for linear algebra. Journal of Open Source Software, Vol. 1, pp. 26, 2016.

Conrad Sanderson and Ryan Curtin. A User-Friendly Hybrid Sparse Matrix Class in C++. Lecture Notes in Computer Science (LNCS), Vol. 10931, pp. 422-430, 2018.

Categories

alignment, sequencing, phylogenetics