ARKS

Description

arks website

Scaffolding genome sequence assemblies using 10X Genomics GemCode/Chromium data. This project is a new kmer-based (alignment free) implementation of ARCS. It provides improved runtime performance over the original ARCS implementation by removing the requirement to perform alignments with bwa mem.

Environment Modules

Run module spider arks to find out what environment modules are available for this application.

Environment Variables

• HPC_ARKS_DIR - installation directory
• HPC_ARKS_BIN - executable directory
• HPC_ARKS_DOC - documentation directory

Categories

phylogenetics