arcashla¶

Description¶

arcasHLA performs high resolution genotyping for HLA class I and class II genes from RNA sequencing, supporting both paired and single-end samples. Modules system sets up the following environment variables for this module:

Environment Modules¶

Run module spider arcashla to find out what environment modules are available for this application.

Environment Variables¶

HPC_ARCASHLA_DIR - installation directory
HPC_ARCASHLA_BIN - executable directory

Categories¶

biology, genetics