AnnoTALE¶

Description¶

AnnoTALE is a suite of applications for identifying and analysing TALEs in Xanthomonas genomes, for clustering TALEs into classes by their RVD sequences, for assigning novel TALEs to existing classes, for proposing TALE names using a unified nomenclature, and for predicting targets of individual TALEs and TALE classes.

Environment Modules¶

Run module spider annotale to find out what environment modules are available for this application.

Environment Variables¶

HPC_ANNOTALE_DIR - installation directory
HPC_ANNOTALE_BIN - executable directory

Citation¶

If you publish research that uses annotale you have to cite it as follows:

Grau, J., Reschke, M., Erkes, A., Streubel, J., Morgan, R. D., Wilson, G. G., Koebnik, R., & Boch, J. (2016). AnnoTALE: Bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences. Scientific Reports, 6, 21077. https://doi.org/10.1038/srep21077

Categories¶

phylogenetics