annocript¶
Description¶
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes blast analysis with UniProt, NCBI Conserved Domain Database and Nucleotide division adding also annotations from Gene Ontology, the Enzyme Commission and UniPathways. Annocript also gives information about the longest ORF and the non-coding potential using external software. Annocript is also capable to identify putative long non-coding RNAs by using an heuristic based on homology and sequence features.
Environment Modules¶
Run module spider annocript to find out what environment modules are available for this application.
Environment Variables¶
- HPC_ANNOCRIPT_DIR - installation directory
- HPC_ANNOCRIPT_BIN - executable directory
- HPC_ANNOCRIPT_EXE - examples directory
- HPC_ANNOCRIPT_CONF - config directory
Additional Usage Information¶
Start by copying the config.
cp $HPC_ANNOCRIPT_CONF/config_user.txt .
Next, you must create a personal database with annocript_
Categories¶
phylogenetics