ancestryhmm¶

Description¶

A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy.

Environment Modules¶

Run module spider ancestryhmm to find out what environment modules are available for this application.

Environment Variables¶

HPC_ANCESTRYHMM_DIR - installation directory
HPC_ANCESTRYHMM_BIN - executable directory

Citation¶

If you publish research that uses ancestryhmm you have to cite it as follows:

Corbett-Detig, R. and Nielsen, R., 2017. A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy. PLoS genetics, 13(1), p.e1006529.

Categories¶

genomics, biology