amrfinderplus

Description

amrfinderplus website

This software and the accompanying database are designed to find acquired antimicrobial resistance genes and some point mutations in protein or assembled nucleotide sequences. We have also added "plus" stress, head, and biocide resistance as well as some virulence factors and E. coli antigens.

Environment Modules

Run module spider amrfinderplus to find out what environment modules are available for this application.

Environment Variables

• HPC_AMRFINDERPLUS_DIR - installation directory
• HPC_AMRFINDERPLUS_BIN - executable directory

Citation

If you publish research that uses amrfinderplus you have to cite it as follows:

Please cite Feldgarden, Michael, Vyacheslav Brover, Daniel H. Haft, Arjun B. Prasad, Douglas J. Slotta, Igor Tolstoy, Gregory H. Tyson et al. "Validating the AMRFinder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates." Antimicrobial agents and chemotherapy 63, no. 11 (2019): e00483-19. https://pubmed.gov/31427293 in any work or product based on this material.

Categories

phylogenetics